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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11462673_11462996_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11462673 - 11462996
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTATTTTATCT
Flanking Amino Acid:
TPVHLALLDEISTCHQLLHP
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
76.7
36.8
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
58.8
0.36
1.6
75.61
41.6

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160