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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11463112_11463753_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11463112 - 11463753
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATGTTCTAAACT
Flanking Amino Acid:
AELSTLYQCIRFPVVAMGVL
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88
0.86
0.6
85
22.7
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
67.7
0.63
1.7
81.61
40.3

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160