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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11463894_11464271_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11463894 - 11464271
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
TGTATTTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TGCATTTGAACT
Flanking Amino Acid:
AASVVEMWKKNKRVSINKDE
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
77.1
0.61
1
77
41.9
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
55.7
0.26
1.5
69.77
41.2

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160