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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11464407_11465036_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11464407 - 11465036
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTAGC
5'SS Class:
major
3'SS Sequence:
TCATTTACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTCATTTACT
Flanking Amino Acid:
TSMDPPPVELIRVPAFLDLF
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
70
40.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.6
0.69
0.8
78.3
34.6
Minor 5ss
32.6
-2
2.5
35.7
34.2
Minor BPS
60.2
0.4
2
78.5
43.2

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160