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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11465788_11466447_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11465788 - 11466447
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TGCACCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTGGTAATA
Flanking Amino Acid:
NLEKNLPEFAKMVCHGEHTY
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
72.7
39.4
Major BPS
100
1.24
0.5
100
0
Major PPT
75.9
0.58
0.9
69
36.9
Minor 5ss
44.7
-0.6
2.8
64.3
39.9
Minor BPS
46.2
-0.2
2.5
67.76
39.4

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160