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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11466601_11467625_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11466601 - 11467625
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTATGC
5'SS Class:
major
3'SS Sequence:
ATTTTTGCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTATTAATT
Flanking Amino Acid:
DCLMLNFTVKLISDAGYQGE
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.7
40.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79
0.65
0.9
74.4
35.8
Minor 5ss
37
-1.5
3.3
50.9
45.6
Minor BPS
71
0.74
1.5
85.63
34.2

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160