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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11468961_11469102_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11468961 - 11469102
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTTTCTAATT
Flanking Amino Acid:
MEPSIFNTLKRYFQAGGSPE
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.2
0.66
0.9
78.9
33.7
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
63
0.49
1.6
79.49
37.4

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160