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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11480525_11481544_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11480525 - 11481544
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TATTATTAATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTATTAATC
Flanking Amino Acid:
EFARYTTPDDAIPEPGEDPR
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.1
0.5
1
71.7
42.5
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
67.9
0.54
1.5
76.1
33.7

Associated Gene:

Gene:
GNAS
Ensembl Gene ID:
ENSAPLG00000015373
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016050
11479433 - 11572403
92971