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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11482311_11484132_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11482311 - 11484132
Intron Length:
1822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGATTA
5'SS Class:
major
3'SS Sequence:
TTTCTTGCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTGGTATTAACT
Flanking Amino Acid:
ERRKWIQCFNDVTAIIFVVA
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.2
33.2
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
82.4
0.73
0.8
81.5
30.5
Minor 5ss
47.8
-0.2
2.8
61.4
45.4
Minor BPS
63.6
0.5
1.7
80.43
41.6

Associated Gene:

Gene:
GNAS
Ensembl Gene ID:
ENSAPLG00000015373
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016050
11479433 - 11572403
92971