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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11484192_11484909_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11484192 - 11484909
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTATTGTGACCC
Flanking Amino Acid:
TKFQVDKVNFHMFDVGGQRD
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
43.2
-0.5
2.3
56.34
41.9

Associated Gene:

Gene:
GNAS
Ensembl Gene ID:
ENSAPLG00000015373
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016050
11479433 - 11572403
92971