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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11484984_11487709_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11484984 - 11487709
Intron Length:
2726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
ATGTGTTGAATC
Flanking Amino Acid:
KQNEYTPSDQDLLRCRVLTS
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
78
0.63
0.8
72.8
32.2
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
49.4
-0
1.8
61.04
39

Associated Gene:

Gene:
GNAS
Ensembl Gene ID:
ENSAPLG00000015373
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016050
11479433 - 11572403
92971