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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11487765_11516780_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11487765 - 11516780
Intron Length:
29016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
GAATGCCAAATT
Flanking Amino Acid:
NEYQLIDCAQYFLDKIDIVK
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
80.8
31.6
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
42.1
-0.9
2.8
56.5
35.6
Minor BPS
42.7
-0.4
2.2
59.54
43.6

Associated Gene:

Gene:
GNAS
Ensembl Gene ID:
ENSAPLG00000015373
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016050
11479433 - 11572403
92971