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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11536132_11536216_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11536132 - 11536216
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCTGCAATAATT
Flanking Amino Acid:
IKNNIKEAIETIVTAMGNLA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
51
0.11
2
73.84
43.2

Associated Gene:

Gene:
GNAS
Ensembl Gene ID:
ENSAPLG00000015373
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016050
11479433 - 11572403
92971