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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11536272_11568378_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11536272 - 11568378
Intron Length:
32107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
ATTATTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
RILHVNGFNAEEKKMKIQDI
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.6
0.69
0.9
74
39.8
Minor 5ss
34.2
-1.8
3.1
38.1
40.6
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
GNAS
Ensembl Gene ID:
ENSAPLG00000015373
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016050
11479433 - 11572403
92971