Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11537_11751_F

Intron Information:

Intron Rank:

149261

Intron Class:

major

Intron Phase:

Intron Coordinates:

11537 - 11751

Intron Length:

215

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTAACTCTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTAGAT

U12 Branch Point Sequence:

ACTTGTGTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

78.8

35.5

Major BPS

66.6

0.41

1.1

62.9

43.3

Major PPT

73.9

0.54

65.7

40.6

Minor 5ss

34.9

-1.7

3.2

42.4

44.3

Minor BPS

49.3

0.03

2.4

73.4

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019648

11216 - 12515

1300