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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11654078_11656660_F

Intron Information:

Intron Rank:
148397
Intron Class:
major
Intron Phase:
Intron Coordinates:
11654078 - 11656660
Intron Length:
2583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTATTTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
50
0.08
1.8
73.25
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029904
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026835
11652495 - 11658177
5683