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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11663688_11664150_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11663688 - 11664150
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ACAATCTGAAAT
Flanking Amino Acid:
HVDIAAPVHAGERATGYGVA
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
70.7
35.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
47.1
-0.3
2.4
59.5
45
Minor BPS
49
0.01
1.6
62.21
41.1

Associated Gene:

Gene:
NPEPL1
Ensembl Gene ID:
ENSAPLG00000001462
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001793
11662804 - 11676722
13919