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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11664262_11664947_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11664262 - 11664947
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
ACTGTTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTATTTTTACT
Flanking Amino Acid:
AVADMKNSVADRDNSPSSCA
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.8
34.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.6
0.67
0.9
73.5
36.4
Minor 5ss
41.8
-0.9
3.2
62
43.4
Minor BPS
59.1
0.37
1.6
76.95
39.3

Associated Gene:

Gene:
NPEPL1
Ensembl Gene ID:
ENSAPLG00000001462
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001793
11662804 - 11676722
13919