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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11665125_11665393_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11665125 - 11665393
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGATA
5'SS Class:
major
3'SS Sequence:
TATATCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCTTCCTGATTT
Flanking Amino Acid:
LDMATLTGAQGIATGKYHAA
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
71.7
39.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
69.1
0.43
0.9
68.2
38.2
Minor 5ss
34.8
-1.7
3.4
48.8
47
Minor BPS
56.5
0.28
1.8
72.32
45

Associated Gene:

Gene:
NPEPL1
Ensembl Gene ID:
ENSAPLG00000001462
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001793
11662804 - 11676722
13919