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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11666265_11669588_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11666265 - 11669588
Intron Length:
3324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATTACAG
Flanking Amino Acid:
LGAFKATVKQGFKDNLHAVF
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.6
0.69
0.9
73.8
40
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
47.1
-0.3
2
57.16
44.3

Associated Gene:

Gene:
NPEPL1
Ensembl Gene ID:
ENSAPLG00000001462
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001793
11662804 - 11676722
13919