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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11671331_11673819_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11671331 - 11673819
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGCTTT
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGGTTCTTAAGT
Flanking Amino Acid:
NGPIEVATLKCLASATEGVR
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
72.5
39.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
87.4
0.84
0.6
83.5
24.9
Minor 5ss
50.5
0.02
3.1
72.8
38.3
Minor BPS
68.2
0.65
1.6
80.01
42.1

Associated Gene:

Gene:
NPEPL1
Ensembl Gene ID:
ENSAPLG00000001462
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001793
11662804 - 11676722
13919