About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11675313_11676572_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11675313 - 11676572
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATT
Flanking Amino Acid:
GKLQPRVTEEIWQSALSTLN
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
80.4
1.03
0.9
89.47
28.1

Associated Gene:

Gene:
NPEPL1
Ensembl Gene ID:
ENSAPLG00000001462
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001793
11662804 - 11676722
13919