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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11716776_11722902_R

Intron Information:

Intron Rank:
152010
Intron Class:
major
Intron Phase:
Intron Coordinates:
11716776 - 11722902
Intron Length:
6127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TCTGTGCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGGTTCTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
79.9
34.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.7
0.4
1
59.4
41.8
Minor 5ss
38.2
-1.3
3
52.2
44.4
Minor BPS
47.8
-0
1.8
62.67
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029347
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023154
11710353 - 11724025
13673