About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11782904_11783395_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11782904 - 11783395
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTGCTCACCC
Flanking Amino Acid:
PRLEGHWVSTGCEVRPGPEF
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70.9
37.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70.1
0.45
0.8
60.7
35.2
Minor 5ss
33.1
-1.9
3.1
36.3
40.5
Minor BPS
42.9
-0.5
2.2
49.56
47

Associated Gene:

Gene:
APCDD1L
Ensembl Gene ID:
ENSAPLG00000002562
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002572
11770426 - 11786808
16383