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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11800481_11802030_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11800481 - 11802030

Intron Length:

1550

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

CCTTTTTTAACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

CCTTTTTTAACA

Flanking Amino Acid:

FELPAENDKPHDIEINKIVS

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

80.3

34.1

Major BPS

0.45

0.9

67.6

25.3

Major PPT

83.2

0.75

0.8

80.1

30.5

Minor 5ss

39.1

-1.2

3.1

61.3

Minor BPS

73.1

0.72

1.2

73.92

38.7

Associated Gene:

Gene:

VAPB

Ensembl Gene ID:

ENSAPLG00000002565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019638

11797989 - 11827269

29281

ENSAPLT00000002604

11797351 - 11827269

29919