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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11802112_11804239_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11802112 - 11804239

Intron Length:

2128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTA|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TAAATTATTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TTAATATTAAAT

Flanking Amino Acid:

PADTSDMEAVWKEAKPEELM

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

0.9

82.6

29.6

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

73.5

0.53

66.2

43.5

Minor 5ss

41.2

-1

2.8

Minor BPS

0.3

1.7

76.28

39.4

Associated Gene:

Gene:

VAPB

Ensembl Gene ID:

ENSAPLG00000002565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019638

11797989 - 11827269

29281

ENSAPLT00000002604

11797351 - 11827269

29919