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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11804344_11811854_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11804344 - 11811854

Intron Length:

7511

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

GTTAACATAATG

Flanking Amino Acid:

IDAGTSINVSVMLQPFDYDP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

79.7

35.3

Major BPS

0.52

1.1

77.7

35.3

Major PPT

96.3

1.04

0.5

92.6

17.2

Minor 5ss

-1.6

47.1

42.6

Minor BPS

-0.2

1.9

59.41

41.9

Associated Gene:

Gene:

VAPB

Ensembl Gene ID:

ENSAPLG00000002565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002604

11797351 - 11827269

29919

ENSAPLT00000019638

11797989 - 11827269

29281