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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11812008_11824917_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11812008 - 11824917
Intron Length:
12910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
CTCTCTTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTGATTTAAAG
Flanking Amino Acid:
IFMPELLFIACPFTDVVTTN
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
70.8
41
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.6
0.69
0.7
76.1
25.9
Minor 5ss
40
-1.1
3
53.3
43.9
Minor BPS
50
-0.1
1.8
58.3
43.1

Associated Gene:

Gene:
VAPB
Ensembl Gene ID:
ENSAPLG00000002565
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019638
11797989 - 11827269
29281