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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11824963_11827211_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11824963 - 11827211

Intron Length:

2249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGGGC

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

TTCAAAGTACCA

Flanking Amino Acid:

LEPQHELKFKEIPKKIFMPE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

65.7

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

1.1

0.4

13.8

Minor 5ss

28.5

-2.5

3.6

41.2

45.5

Minor BPS

38.4

-0.8

2.4

54.01

44.1

Associated Gene:

Gene:

VAPB

Ensembl Gene ID:

ENSAPLG00000002565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019638

11797989 - 11827269

29281