About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11839199_11840418_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11839199 - 11840418
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTGCAATAAAT
Flanking Amino Acid:
ININELFIEISRRIPSTDTN
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
86.4
28.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75
0.56
0.8
68.9
31.7
Minor 5ss
43.5
-0.7
2.9
62.1
37.1
Minor BPS
52
0.14
2.1
79.82
41.4

Associated Gene:

Gene:
RAB22A
Ensembl Gene ID:
ENSAPLG00000002631
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002662
11838593 - 11852321
13729