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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11842487_11842583_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11842487 - 11842583
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGATTCTTATTT
Flanking Amino Acid:
AIIVYDITKEETFSTLKNWV
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.4
0.53
0.9
71.9
32.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
64.1
0.52
1.6
77.14
39.6

Associated Gene:

Gene:
RAB22A
Ensembl Gene ID:
ENSAPLG00000002631
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002662
11838593 - 11852321
13729