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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11842656_11846722_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11842656 - 11846722
Intron Length:
4067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
GATTCATGATGT
Flanking Amino Acid:
LIWDTAGQERFRALAPMYYR
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.1
38.4
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
89.5
0.89
0.6
87.9
22.1
Minor 5ss
29.2
-2.4
2.5
25
36.7
Minor BPS
44.3
-0.3
2.2
64.5
45

Associated Gene:

Gene:
RAB22A
Ensembl Gene ID:
ENSAPLG00000002631
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002662
11838593 - 11852321
13729