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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11846805_11850426_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11846805 - 11850426
Intron Length:
3622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTCTAAAAAT
Flanking Amino Acid:
SFDPNINPTIGASFMTKTVQ
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
35.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
33.3
-1.9
2.9
35.7
40.8
Minor BPS
50.2
0.08
2
75.43
40.9

Associated Gene:

Gene:
RAB22A
Ensembl Gene ID:
ENSAPLG00000002631
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002662
11838593 - 11852321
13729