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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11850507_11852285_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11850507 - 11852285
Intron Length:
1779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTCTTTCAATT
Flanking Amino Acid:
LRELKVCLLGDTGVGKSSIV
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
87.6
0.85
0.7
81.2
36.5
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
57.6
0.32
1.5
72.72
39

Associated Gene:

Gene:
RAB22A
Ensembl Gene ID:
ENSAPLG00000002631
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002662
11838593 - 11852321
13729