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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11860043_11860414_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11860043 - 11860414
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTA
5'SS Class:
major
3'SS Sequence:
TGTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TGTTCTTCCACA
Flanking Amino Acid:
KYAFSDNVFNRQIIARGLLD
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
69.2
38
Major BPS
70.2
0.5
1
72.1
33
Major PPT
81.6
0.71
0.8
76.4
32.3
Minor 5ss
38.6
-1.3
3.6
55.4
48.8
Minor BPS
55.9
0.18
2
72.25
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002651
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002724
11852780 - 11875264
22485
ENSAPLT00000044842
11852766 - 11875264
22499
ENSAPLT00000034832
11852766 - 11879626
26861