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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11860918_11861405_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11860918 - 11861405
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATTACTA
Flanking Amino Acid:
VRYLTDVNNQVRKAGQEALL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.2
0.59
0.9
71.1
38.7
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
52.7
0.08
1.9
67.42
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002651
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034832
11852766 - 11879626
26861
ENSAPLT00000002724
11852780 - 11875264
22485
ENSAPLT00000044842
11852766 - 11875264
22499