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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11861553_11862891_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11861553 - 11862891
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CCCTTCTTGATT
Flanking Amino Acid:
DDEYKVEAVNIICKMASMLS
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
79.7
0.67
0.8
78
35.1
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
63.3
0.5
1.3
69.43
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002651
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044842
11852766 - 11875264
22499
ENSAPLT00000034832
11852766 - 11879626
26861
ENSAPLT00000002724
11852780 - 11875264
22485