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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11864890_11865347_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11864890 - 11865347
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TATACTATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATAC
Flanking Amino Acid:
ISLISDTCRWVRQAAFQSLG
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.3
39.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72
0.5
0.9
62.8
42.5
Minor 5ss
39.2
-1.2
2.8
43.8
43.8
Minor BPS
61
0.32
1.7
71.26
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002651
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044842
11852766 - 11875264
22499
ENSAPLT00000034832
11852766 - 11879626
26861
ENSAPLT00000002724
11852780 - 11875264
22485