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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11865542_11865889_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11865542 - 11865889
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATGGATAATT
Flanking Amino Acid:
IASSTNATSSSSEQPMEIKP
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.2
0.48
1
70.6
39.9
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
44.1
-0.3
2.5
68.03
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002651
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002724
11852780 - 11875264
22485
ENSAPLT00000044842
11852766 - 11875264
22499
ENSAPLT00000034832
11852766 - 11879626
26861