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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11869120_11869660_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11869120 - 11869660
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTAATGGAAAT
Flanking Amino Acid:
PFEDDKSKLQDIIPQPLLDQ
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.2
26.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.2
0.57
0.8
69.7
31.1
Minor 5ss
29.7
-2.3
2.6
33.3
41.8
Minor BPS
41.1
-0.5
2.2
62.54
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002651
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002724
11852780 - 11875264
22485
ENSAPLT00000044842
11852766 - 11875264
22499
ENSAPLT00000034832
11852766 - 11879626
26861