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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11870547_11871631_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11870547 - 11871631
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTACGTAAT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
GAGTTAATAACT
Flanking Amino Acid:
RNWRFRYELAEQLILILELY
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
71.8
39.8
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
37.6
-1.4
3
47.1
42.6
Minor BPS
49.3
0.03
1.9
68.13
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002651
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044842
11852766 - 11875264
22499
ENSAPLT00000034832
11852766 - 11879626
26861
ENSAPLT00000002724
11852780 - 11875264
22485