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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11909357_11910154_F

Intron Information:

Intron Rank:
123336
Intron Class:
major
Intron Phase:
Intron Coordinates:
11909357 - 11910154
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTGCATTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
91.9
0.94
0.6
84.9
30
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
52.5
0.08
1.8
65.47
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016501
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041557
11908424 - 11923190
14767
ENSAPLT00000022733
11908424 - 11915529
7106