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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11946391_11966985_R

Intron Information:

Intron Rank:
154047
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
11946391 - 11966985
Intron Length:
20595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
AAACCTGATACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TGTGTTTAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
58.8
0.2
1.1
50.6
42
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
54
0.11
1.8
65.82
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020776
11946097 - 11967926
21830