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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11964240_11966985_R

Intron Information:

Intron Rank:
154049
Intron Class:
major
Intron Phase:
Intron Coordinates:
11964240 - 11966985
Intron Length:
2746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTGTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
78.9
0.65
0.8
72.9
31.8
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
63.6
0.5
1.7
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042965
11963889 - 11967926
4038