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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11982405_11985106_R

Intron Information:

Intron Rank:
130624
Intron Class:
major
Intron Phase:
Intron Coordinates:
11982405 - 11985106
Intron Length:
2702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAGAA
5'SS Class:
major
3'SS Sequence:
TTCCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AAACATTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.8
35.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
87.8
0.85
0.6
87.4
22.9
Minor 5ss
28
-2.5
3.5
37.9
46.9
Minor BPS
46.8
-0.1
1.6
59.7
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017515
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020042
11978675 - 11985342
6668