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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1205521_1218452_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1205521 - 1218452
Intron Length:
12932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTTCTCTACCC
Flanking Amino Acid:
VYLNNTGYRTAFFGKYLNEY
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.4
35.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
70.9
0.47
0.8
63
33.3
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
54.2
0.11
2
70.56
41.3

Associated Gene:

Gene:
SULF2
Ensembl Gene ID:
ENSAPLG00000009910
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028490
1150893 - 1261834
110942
ENSAPLT00000010385
1159516 - 1261738
102223
ENSAPLT00000041258
1150893 - 1261834
110942
ENSAPLT00000040305
1196878 - 1261997
65120