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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12073744_12105525_F

Intron Information:

Intron Rank:
148669
Intron Class:
major
Intron Phase:
Intron Coordinates:
12073744 - 12105525
Intron Length:
31782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCCTCTCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
85.3
0.79
0.8
84.6
30.3
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
56.9
0.21
1.7
66.6
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030040
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038996
12073650 - 12105645
31996