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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12225306_12235348_F

Intron Information:

Intron Rank:
124469
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12225306 - 12235348
Intron Length:
10043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
CTCCCTACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GTCTCCCTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
72.3
0.5
0.8
69.5
29.6
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
56.8
0.29
2
77.44
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017110
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030318
12225247 - 12237974
12728