Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12235474_12236744_F

Intron Information:

Intron Rank:

124470

Intron Class:

major

Intron Phase:

Intron Coordinates:

12235474 - 12236744

Intron Length:

1271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTCTG

5'SS Class:

major

3'SS Sequence:

TTCTCCCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAGAT

U12 Branch Point Sequence:

TTAGATTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

66.8

44.5

Major BPS

79.2

0.72

Major PPT

76.5

0.6

0.9

73.2

31.7

Minor 5ss

-1.1

42.1

Minor BPS

49.1

0.01

1.8

69.24

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017110

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030318

12225247 - 12237974

12728