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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12258550_12259143_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12258550 - 12259143
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TATTCCTTAACA
Flanking Amino Acid:
SEATAAAEHKGKIIMHDPFA
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
67.4
0.39
1.1
63.1
42.2
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
92.3
1.32
0.8
93.06
25.4

Associated Gene:

Gene:
PCK1
Ensembl Gene ID:
ENSAPLG00000002914
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002967
12257438 - 12264908
7471